4. Development of a biomarker score to identify a subgroup of treatment responders

Team: Prof Martin Posch, Prof Alexandra Graf (Medical University Vienna), Prof Gernot Wassmer (Aptiv Solutions)
Clinical Advisor: Prof Michael Wolzt
, head of the coordination center for clinical studies; consultant for Internal Medicine and Clinical Pharmacology; former vice-chair of the ethics committee at the Medical University of Vienna.
Location: Medical University Vienna (Vienna, Austria)

An important objective in the development of personalized medicines is the identification of patient subgroups which are more likely to benefit from an experimental treatment. If such subgroups can be identified at an early stage of development, this will lead to a more efficient drug development overall. If the heterogeneity of the treatment effect is ignored this could result in stopping the development of a useful treatment due to a dilution of the treatment effect in the full population. A major statistical challenge is the vast number of potential subgroups that can be built by biomarkers and their combination, e.g. next generation sequencing offers a prohibitively large number of potential markers to define subpopulations. The development of a biomarker score will be structured in subgroup identification and subgroup confirmation steps that will be integrated in a comprehensive framework. For the subgroup identification step we will use large scale multiple testing procedures controlling the false discovery rate, model selection tools as the Lasso combined with unsupervised statistical learning algorithms to define biomarker scores. To make efficient use of clinical trial data information from multiple endpoints (clinical and surrogate endpoints) will be used to measure the treatment effect in different subgroups. We will consider both, dichotomous and continuous endpoints and biomarkers and address the optimal choice of thresholds on the biomarkers to define subgroups4 . More generally, the sensitivity to identify treatment responders correctly will be taken into account.

To integrate subgroup identification and confirmation in a unified framework, special focus will be given to enrichment designs5,6 , with an adaptive interim analysis that allows restricting recruitment in the second stage to subpopulations identified in the first stage data. In settings where a large number of hypothesis are tested, such designs have shown to be superior to fixed sample designs7 and we expect that similar gains in efficiency can be obtained in the determination of subgroups. To address the risk to restrict the population too early such that not all patients benefiting from a drug are correctly identified, we will apply a Bayesian decision-theoretic approach to evaluate how much evidence is needed to drop a subgroup or to decide to carry it forward to the next development phase.

Meet our Early Stage Researcher: Nico Ballarini, Medical University Vienna

Nico New
I am from Rosario, Argentina. After receiving my Bachelor´s degree in Statistics at Universidad Nacional de Rosario, I worked for a couple of years in clinical research, public health studies and teaching. In 2015, I graduated with a Master in Biostatistics from the University of North Carolina at Chapel Hill. In my MS paper I investigated “Working Model Selection in the Continual Reassessment Model” and my IDEAS project is focused on developing a biomarker score to identify a subgroup of treatment responders. In my free time, I enjoy swimming, dancing and travelling.

4 Jiang W, Freidlin B, Simon R. (2007) J Natl Cancer I, 99:1036-43.

5 Bretz F, König F, Brannath W, Glimm E, Posch M (2009) Adaptive designs for confirmatory clinical trials. Stat Med, 8:1181-17.
6 Freidlin B, Korn EL. (2014) Biomarker enrichment strategies: matching trial design to biomarker credentials. Nat Rev Clin Oncol 11, 81–90.
7 Zehetmayer S, Bauer P, Posch M. (2005) Two-stage designs for experiments with a large number of hypotheses, Bioinformatics, 21:3771-77


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